BBC 2011 Luxembourg

The Conference Proceedings are now available (update, click to download).

Day 1: 12.12.2011
Day 2: 13.12.2011
Flash Oral presentations - A
Flash Oral presentations - B
Poster Session A
Poster Session B

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12 December 2011
08:00	Collection of delegate bags, new registrations, coffee
09:30	Opening Francisco Azuaje, BBC11 organising committee. Jean-Claude Schmit, CEO of CRP-Santé. Peter Sodermans, Luxembourg for Business. Reinhard Schneider, Programme Co-Chair
Session 1 Chair: Reinhard Schneider, University of Luxembourg
10:00	Guest Talk Evolution teaches protein prediction Burkhard Rost, Technical University Munich, Germany
10:45	Interfering with the interaction network of adenyl cyclase virulence factors Therese Malliavin, Institut Pasteur, France
11:05	Computational annotation and interpretation of single nucleotide variation to identify disease-causing variants by next-generation sequencing Alejandro Sifrim, K.U.Leuven, Belgium
11:30	Session 2 (Flash oral presentation - A) Chair: Michaël Heymann, IBBL, Luxembourg
12:00	Lunch
Session 3 Chair: Andreas Kremer, Erasmus Medical Center, The Netherlands
13:00	Prediction of a phosphorylation network in Arabidopsis thaliana Kris Laukens, University of Antwerp, Belgium
13:20	Spatial Clustering of Protein Binding Sites for Template Based Protein Docking Anisah Ghoorah, INRIA, France
13:40	An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data Trung Nghia Vu, University of Antwerp, Belgium
14:00	Systems Biology Analysis of Tyrosine Kinase Inhibitor Target Profiles in Leukemia Jacques Colinge, CeMM, Austria
14:20	An Efficient Algorithm to Perform Multiple Testing in Epistasis Screening François Van Lishout, University of Liège, Belgium
14:40	Break
Session 4 Chair: Anna Chioti, CRP-Santé, Luxembourg
15:15	Statistical interpretation of machine learning-based feature rankings for biomarker discovery Vân Anh Huynh-Thu, University of Liège, Belgium
15:35	MSCOMPARE- Data Processing Framework for Quantitative Processing of Label-Free LC-MS data Peter Horvatovich, University of Groningen, The Netherlands
15:55	Guest Talk Applying Bioinformatics to Clinical Practice in Treating HIV Infections: Where Do We Stand? Thomas Lengauer, Max-Planck-Institut für Informatik, Germany
16:45	Poster session A (to 17:45)
17:15	Speed research dating (to 18:00)
19:00	Reception Dinner

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13 December 2011
Session 5 Chair: Marie-Dominique Devignes, LORIA, France
09:00	Guest Talk Translational Bioinformatics : From biocuration to model predictions and back Ioannis Xenarios, Swiss Institute of Bioinformatics, Switzerland
09:45	Probic: Simultaneously detecting coexpression modules and their regulatory patterns Yan Wu, K.U.Leuven, Belgium
10:05	Visualizing genotype-phenotype relationships across cell cycle and evolutionary time scales Maria Secrier, EMBL, Germany
10:25	Detection of genes essential for growth of respiratory pathogens Aldert Zomer, Nijmegen Centre for Molecular Life Sciences, The Netherlands
10:45	Break
11:30	Debate Technological and Cooperation Challenges in Bioinformatics
12:30	Lunch
Session 6 Chair: Gert Vriend, Radboud University, The Netherlands
13:30	Bayesian Inference of Protein Complex Modules from Affinity Purification Mass Spectrometry Data Alexey Stukalov, CeMM, Austria
13:50	Data-analytical strategies for enrichment-based genome-wide DNA-methylation profiling by NGS Tim De Meyer, Ghent University, Belgium
14:10	SABIO-RK: A Resource for Biomedical Research Renate Kania, Heidelberg Institute for Theoretical Studies, Germany
14:30	Session 7 (Flash oral presentation - B) Chair: Merja Heinäniemi, University of Luxembourg
15:00	Poster session B (with coffee break)
Closing Session Chair: Francisco Azuaje, CRP-Santé, Luxembourg
16:00	Guest Talk Genome-Wide Translational Medicine Applications Peter van der Spek, Erasmus Medical Center, The Netherlands
16:45	Closing remarks Yves Moreau, K.U.Leuven, Belgium

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Flash oral presentations - A

eBiomics: a Bioinformatics e-Learning Environment for Biologists
Patrick Koks, Wageningen University, The Netherlands

Probabilistic Models for Transcription Factor Binding and their Application to Regulatory Polymorphism Detection
Nikos Vlassis, University of Luxembourg.

iSNP: An Integrated, Automatically Updated SNP Database Server Over Web
Yesim Aydin Son, Middle East Technical University, Turkey

Exposing WikiPathways as Linked Open Data
Andra Waagmeester, Maastricht University, The Netherlands

Implementation of the Protein Fluorescence And Structural Toolkit (PFAST)
Cynthia N. Prudence, University of Rhode Island, USA

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Flash oral presentations - B

BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation
Anthony ML Liekens, Universiteit Antwerpen, Belgium

Origin and Evolution of the Organellar Release Factor Family
Isabel Duarte, Radboud University, The Netherlands

Protein regulation dynamics analysis in R
Jacques Colinge, Research Center for Molecular Medicine, Austria

Inheritance analysis and quality control for Next Generation Sequencing data
Joep de Ligt, UMC St. Radboud, The Netherlands

Reflect: an augmented browsing tool for life scientist
Janos Binder, EMBL, Germany

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The maximum size of posters is A0: 84.1 cm (width) and 118.9 cm (height).

Poster Session A

ID	Poster
A1	eBiomics: a Bioinformatics e-Learning Environment for Biologists; Patrick Koks, Pascale Berthault, Guy Bottu, Jacques van Helden, Jean-Pierre Kraehenbuhl, Frédérique Lisacek, Grégoire Rossier, Jean Sylvestre, Jack Leunissen; Laboratory of Bioinformatics, Wageningen University, The Netherlands.
A2	Probabilistic Models for Transcription Factor Binding and their Application to Regulatory Polymorphism Detection; Anke K. Wienecke-Baldacchino, Merja Heinäniemi, Nikos Vlassis; Life Sciences Research Unit, University of Luxembourg; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg.
A3	iSNP: An Integrated, Automatically Updated SNP Database Server Over Web; Ceyhun Gediko?lu, Levent Çarkac?o?lu, Ye?im Ayd?n Son; Bioinformatics Graduate Program; Health Informatics Department, Middle East Technical University, Ankara, Turkey.
A4	Exposing WikiPathways as Linked Open Data; Andra Waagmeester, Helena F. Deus, Chris T. Evelo; Department of Bioinformatics - BiGCaT, Maastricht University; Digital Enterprise Research Institute, National University of Ireland, Galway.
A5	Implementation of the Protein Fluorescence And Structural Toolkit (PFAST); Cynthia N. Prudence, Yana K. Reshetnyak; Physics Department, University of Rhode Island, USA.
A6	Gene set analysis in the cloud; Lu Zhang, Shengchang Gu, Yuan Liu, Bingqiang Wang, Francisco Azuaje; Laboratory of Cardiovascular Research, CRP-Santé, Luxembourg; BGI, China.
A7	Breaching the surface with HOPE; Jules Kerssemakers; CMBI, Radboud University Nijmegen Medical Centre, The Netherlands.
A8	Towards a Standard for Cooperative Interactions; Kim Van Roey, Henning Hermjakob, Samuel Kerrien, Toby J. Gibson; Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
A9	Gene expression evolution on the emergence of pathogenicity in Ascomycetes; Aminael Sanchez-Rodriguez, Riet De Smet, Kristof Engelen, Qiang Fu, Yan Wu, Kathleen Marchal; Centre of Microbial and Plant Genetics, Department of Microbial and Molecular Systems, K.U.Leuven, Belgium.
A10	Prediction of bacterial relationships in the human microbiome; Karoline Faust, J. Fah Sathirapongsasuti, Curtis Huttenhower, Jeroen Raes; Bioinformatics and (Eco-)Systems Biology, VIB-Vrije Universiteit Brussel, Belgium.
A11	Union makes strength: Building baseline Tracks from 69 open access full human genomes; Stephane PLAISANCE, Mark VEUGELERS; BITS, VIB, Belgium.
A12	Using Hilbert curves to visualize structural variations with Meander; Georgios A. Pavlopoulos, Alejandro Sifrim, Jan Aerts; Faculty of Electrical Engineering - ESAT/SCD, Katholieke Universiteit Leuven, Leuven, Belgium.
A13	Genomic Profiling of HMGN; Arjan van der Velde; National Center for Biotechnology Information (NCBI/NIH), United States.
A14	Proteins in the orthology twilight zone. The Ortho-Profile iterative method and the experimental function confirmation; Radek Szklarczyk, Bas F.J. Wanschers, Thomas D. Cuypers, Leo G. Nijtmans, Martijn A. Huynen; CMBI, Radboud University Nijmegen Medical Centre.
A15	Specificity of allostery networks within the SH3 domain family; Ana Zafra Ruano, José Couceiro, Javier Ruiz Sanz,Joost Schymkowitz, Frederic Rousseau, Irene Luque, Tom Lenaerts; Département d'Informatique, Université Libre de Bruxelles, Belgium.
A16	Identifying common structural DNA properties in transcription factor binding site sets of the LacI-GalR family; Meysman Pieter, Marchal Kathleen, Engelen Kristof; M2S, K.U.Leuven, Belgium.
A17	Modelling the dynamics of chromic myeloid leukemia under therapy; Tom Lenaerts, Fausto Castagnetti, Arne Traulsen, Jorge M. Pacheco, Gianantonio Rosti, David Dingli; Département d'Informatique, Université Libre de Bruxelles, Belgium.
A18	Understanding US28-mediated-catenin activation; K. Anton Feenstra, Marco Siderius, Folkert Verkaar, Nicola Bonzanni, Jaap Heringa, Martine Smit; VU University, Faculty of Sciences, IBIVU Centre for Integrative Bioinformatics; LACDR Division of Medicinal Chemistry.
A19	PROCAR-SEQ An analysis and visualization framework for next-generation sequencing based quantification of prokaryotic communities; Joachim De Schrijver, Pieter-Jan Volders, Frederiek-Maarten Kerckhof, Dagmar Obbels, Elie Verleyen, Wim Vyverman, Tim De Meyer, and Wim Van Criekinge; Laboratory of Computational Genomics and Bioinformatics (BioBix), Ghent University, Ghent, Belgium.
A20	The Fc receptor complex from human neutrophils; Florentinus AK, Jankowski A, Petrenko V, Bowden P, Marshall JG; Department of Chemistry and Biology, Ryerson University, Canada.
A21	Proteomic identification of differentially expressed proteins in curcumin-treated prostate cancer cells; Anthoula Gaigneaux, Marie-Hélène Teiten, Sébastien Chateauvieux, Anja Billing, Jenny Renaut, Claude P. Müller, Mario Dicato, Marc Diederich; Laboratoire de Biologie Moléculaire et Cellulaire du Cancer.
A22	Divergence in the length of unstructured protein termini drives the evolution of protein half-life; Robin van der Lee, Kai Kruse, Benjamin Lang, Jörg Gsponer, Natalia Sánchez de Groot, Monika Fuxreiter, M. Madan Babu; MRC Laboratory of Molecular Biology, Cambridge, United Kingdom; Centre for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, The Netherlands.
A23	PuMaQC: R-based pipeline for the search, import and QC/QA of public microarray data; Joana P. Corte-Real, Petr V. Nazarov, Arnaud Muller, Tony Kaoma and Laurent Vallar; Microarray Center, CRP-Sante, Luxembourg.
A24	Identification of crosstalk strength in signalling networks by optimization of Probabilistic Boolean Network models; Thomas Sauter, Panuwat Trairatphisan; Life Sciences Research Unit, University of Luxembourg.
A25	Accuracy of information flow predictions within the PTP1E PDZ2 domain; Elisa Cilia, Geerten W. Vuister, Tom Lenaerts; Départment d?Informatique, Université Libre de Bruxelles, Belgium.
A26	DALAS: an R-Java desktop application for Affymetrix exon array data analysis; Tony KAOMA, Christelle GHONEIM, Arnaud MULLER, Petr NAZAROV, Laurent VALLAR; Microarray Centre, CRP-Sante, Luxembourg.
A27	Cis-regulation of toxin clusters in Fusarium; Valeria Montis, Francesca Cardinale, Ivan Visentin, Marco Beyer, Hoffmann Lucien, Harold Corby Kistler, Matias Pasquali; Dept of Plant Physiology, University of Torino; CRP- Gabriel Lippmann, EVA Department; USDA ARS Cereal Disease Laboratory, St Paul USA.
A28	Analysis of the X!TANDEM correlation of the HuPO blood consortium results by SQL and SAS; Bowden P, Beavis R, Marshall JG; Department of Chemistry and Biology, Ryerson University, Canada.
A29	Quantitative statistical analysis of blood proteins from liquid chromatography, electrospray ionization and tandem mass spectrometry; Bowden P, Zhu P, McDonnel M, Thiele H, Marshall JG; Department of Chemistry and Biology, Ryerson University, Canada.
A30	Analyzing gene and protein expression variance in cellular pathways using high-throughput experimental data; Enrico Glaab, Reinhard Schneider; Luxembourg Centre for Systems Biomedicine.
A31	COLOMBOS: Access Port for Cross-Platform Bacterial Expression Compendia; Kristof Engelen, Qiang Fu, Pieter Meysman, Aminael Sánchez-Rodríguez, Riet De Smet, Karen Lemmens, Ana Carolina Fierro, Kathleen Marchal; Department Of Microbial And Molecular Systems (M2S), KULeuven, Beligum.
A32	Receptor-Ligand Prediction through Machine Learning; Ernesto Iacucci, D. Popovic, L.-C. Tranchevent, B. De Moor, and Y. Moreau; KULeuven, ESAT/SCD.
A33	Metabolic Modeling of Human Adipogenesis; Mafalda Galhardo, Merja Heinäniemi, Thomas Sauter; LSRU, University of Luxembourg, Luxembourg.
A34	Merging partially labelled trees; Anthony Labarre, Sicco Verwer; Department of Computer Science, Katholieke Universiteit Leuven, Belgium.
A35	EVALUATION OF NOVEL SNP PRIORITIZATION AND SUB-SET SELECTION APPROACHES FOR GWAS; Yesim AYDIN SON; Bioinformatics Graduate Program; Health Informatics Department, Middle East Technical University,Ankara,Turkey.
A36	The influence on protein structure of single nucleotide polymorphisms identified in Mycobacterium tuberculosis; E Vandermarliere, T Muth, J Blackburn, L Martens; Department of Biochemistry, Ghent University, Belgium and Department of Medical Protein Research, VIB, Belgium.
A37	Comparative genomics of GlnR-mediated transcription regulation in Gram-positive bacteria; Tom Groot Kormelink, Eric Koenders, Yanick Hagemeijer, Lex Overmars, Roland J. Siezen, Willem M. de Vos and Christof Francke; Kluyver Centre for Genomics of Industrial Fermentation, GA Delft, The Netherlands; I Food and Nutrition, Wageningen, The Netherlands; Laboratory of Microbiology, Wageningen University & Research Centre, Wageningen, The Netherlands; Netherlands Bioinformatics Centre, Nijmegen, The Netherlands; Centre for Molecular and Biomolecular Informatics,NCMLS, Radboud University Nijmegen Medical Centre,Nijmegen, The Netherlands.
A38	USE OF DOMAIN KNOWLEDGE FOR DIMENSION REDUCTION: APPLICATION TO DRUG SIDE EFFECTS; Emmanuel Bresso, Sidahmed Benabderrahmane, Malika Smail-Tabbone, Gino Marchetti, Arnaud Sinan Karaboga, Michel Souchet, Amedeo Napoli and Marie-Dominique Devignes; LORIA CNRS, Nancy University, INRIA Nancy Grand-Est and Harmonic Pharma (SAS), France.
A39	Identify me, says the alien peptide. Combining publicly available mS/MS repositories and clustering tools to identify peptides from non-model organisms; Gerben Menschaert, Eisuke Hayakawa, Wim Van Criekinge, Geert Baggerman; Laboratory of Computational Genomics and Bioinformatics (BioBix), Ghent University, Ghent, Belgium.
A40	A method to detect mono- and biallelic DNA-methylation from MBD-seq using single nucleotide polymorphisms; Sandra Steyaert, Ayla De Paepe, Geert Trooskens, Simon De Nil, Wim Van Criekinge, Tim De Meyer; Department of Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Ghent, Belgium.
A41	Multivariate Framework for Biomarker Discovery; Yousef El Aalamat, Dusan Popovic, Etienne Waelkens, Bart de Moor Katholieke Universiteit Leuven, Dept. of Electrical Engineering, (ESAT), CD-SISTA (BIOI), Leuven, Belgium.
A42	Preprocessing approach for single-cell array Comparative Genomic Hybridization; J. Cheng, P. Konings, E. Vanneste,T. Voet, J. Vermeesch, Y. Moreau; Department of Electrical Engineering, ESAT-SCD, Katholieke Universiteit Leuven, Belgium; IBBT-K.U.Leuven Future Health Department, Belgium; Center for Human Genetics, Katholieke Universiteit Leuven.
A43	Analysis of critical transitions in Parkinson's disease; Christophe Trefois, Paul Antony, Aidos Baumuratov, Sandra Koeglsberger, Olga Boyd, Rudi Balling; Luxembourg Centre for Systems Biomedicine, Luxembourg.

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Poster Session B

ID	Poster
B1	BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation; Anthony ML Liekens, Jeroen De Knijf, Walter Daelemans, Bart Goethals, Peter De Rijk, Jurgen Del-Favero; Universiteit Antwerpen.
B2	Origin and Evolution of the Organellar Release Factor Family; Isabel Duarte, Sander Nabuurs, Ramiro Magno, Martijn Huynen; CMBI, Radboud University, The Netherlands.
B3	Protein regulation dynamics analysis in R; Florian P Breitwieser, Alexey Stukalov, Jacques Colinge; Research Center for Molecular Medicine, Austria.
B4	Inheritance analysis and quality control for Next Generation Sequencing data; Joep de Ligt, Lisenka E.L.M. Vissers, Christian Gilissen, Joris A. Veltman, Jayne Y. Hehir-Kwa; Department of Human Genetics, UMC St. Radboud, Nijmegen.
B5	Reflect: an augmented browsing tool for life scientist; Janos Binder, Sean O'Donoghue, Sune Frankild, Lars Juhl Jensen, Reinhard Schneider; Structural and Computational Unit, EMBL, Germany.
B6	Prediction of cardiac perturbations of non-cardiovascular drugs with My-DTome; Lu Zhang, Yvan Devaux, Daniel R. Wagner, Francisco Azuaje; Laboratory of Cardiovascular Research, CRP-Santé, Luxembourg.
B8	Charting The Methylome; eert Trooskens, Tim de Meyer, Simon Denil, Wim Van Criekinge; Ghent University.
B10	Mining the rest-fraction in RNA-seq experiments; Simon Denil, Tina Kyndt, Annelies Haegeman, Geert Trooskens, Tim De Meyer, Wim Van Criekinge, Godelieve Gheysen; Laboratory of Computational Genomics and Bioinformatics (BioBix), Ghent University, Ghent, Belgium.
B11	Functional classification and co-expression analysis of genetically imprinted Genes; M.Hamed, Siba Isma'el, Martina Polsky, Volkhard Helms; Chair of Computational Biology, Saarland University Germany.
B12	Micro peptides as a new class of bio-active peptides in Eukaryotes; Jeroen Crappé, Gerben Menschaert, Geert Trooskens, Joachim Deschrijver, Geert Baggerman, Wim Vancriekinge; Biobix, Ghent University.
B14	Predicting the Interactions between G-Protein Coupled Receptors: Computational and Experimental Approaches; Mehmet Emre ?ahin, Tolga Can, Cagdas D. SON; Biyological Sciences Department, METU, Turkey.
B15	?Last In First Out? gain and loss of the Intra Flagellar Transport components; John van Dam, Martijn Huynen; Centre for Molecular and Biomolecular Informatics, Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands.
B16	Are REPs genetic insulators that enable differential regulation of gene expression in bacteria?; Lex Overmars, Tom Groot Kormelink, Roland Siezen and Christof Francke; TI Food and Nutrition, The Netherlands; Radboud University Medical Centre; Centre for Molecular and Biomolecular Informatics, The Netherlands, 3) Kluyver Centre for Genomics of Industrial Ferm
B17	Automated comparative genome annotation in prokaryotes: a halt to error propagation?; Thomas H. A. Ederveen, Amy de Bruin, Brechtje Hoegen, Bernadet Renckens, Roland J. Siezen, Sacha A. F. T. van Hijum; Centre for Molecular and Biomolecular Informatics, Radboud University Medical Centre, the Netherlands; HAN University of Applied Sciences, the Netherlands; NIZO food research, the Netherlands.
B18	Dynamic co-regulation of miRNAs and mRNAs following cytokine stimulation of melanoma cells; Susanne Reinsbach, Peter V. Nazarov, Martina Schmitt, Demetra Philippidou, Nathalie Nicot, Iris Behrmann, Laurent Vallar, Stephanie Kreis; Universtiy of Luxembourg; Microarray Center, CRP-Santé, Luxembourg.
B19	Critical assessment of candidate gene prioritization methods; Daniela Börnigen, Léon-Charles Tranchevent, Francisco Bonachela-Capdevila, Koenraad Devriendt, Bart de Moor, Patrick De Causmaecker, and Yves Moreau; Department of Electrical Engineering, KULeuven, BE; IBBT-K.U.Leuven Future Health Department, BE; Department of Computer Science, KULeuven, BE; Center for Human Genetics, KULeuven, BE.
B20	A kernel based framework for cross-species candidate gene prioritization Shi Yu, Léon-Charles Tranchevent, Sonia Leach, Pooya Zakeri, Bart De Moor, and Yves Moreau; Department of Electrical Engineering ESAT-SCD, Katholieke Universiteit; IBBT-K.U.Leuven Future Health Department, Leuven, Belgium.
B21	A novel approach for the identification of miRNAs; Bart Aelterman, Peter De Rijk, Jurgen Del-Favero; Applied Molecular Genomics Unit, VIB Department of Molecular Genetics, VIB, University of Antwerp, Belgium.
B22	Arrayanalysis.org: friendly solutions for standardised microarray analysis; Lars Eijssen, Magali Jaillard, Michiel Adriaens, Anwesha Dutta, Martina Kutmon, Philip de Groot, Chris Evelo; Department of Bioinformatics, BiGCaT, Maastricht University, NL; Nutrition, Metabolism and Genomics Group, Wageningen, NL.
B23	Comparative studies of genome-wide DNA methylation arrays and gene expression data: a breast cancer as an example; Singhal Sandeep K.,Desmedt Christine, Ignatiadis Michail, Sotiriou Christos, Michiels Stefan; Breast Cancer Translational Research Laboratory, Institut Jules Bordet, Université Libre de Bruxelles, Bruxelles, Belgium.
B24	Classification of MCAD deficiency using tandem MS neonatal screening data; Tim Van den Bulcke; biomina, Antwerp University Hospital, Belgium.
B25	Capture of an activated receptor complex from the surface of live cells by affinity receptor chromatography; Jankowski A, Zhu P, Marshall JG; Department of Chemistry and Biology, Ryerson University, Canada.
B26	A Custom-Designed Peak Picking Algorithm for Mass Spectral Imaging Data; Nico Verbeeck, Raf Van de Plas, Etienne Waelkens, Bart De Moor; ESAT-SCD, Katholieke Universiteit Leuven, Belgium.
B27	A non-parametric method to assess the presence of significant DNA-methylation in enrichment-based NGS data; Klaas Mensaert, Geert Trooskens ,Wim Van Criekinge, Olivier Thas ,Tim De Meyer; Dept. Mathematical Modelling, Statistics and Bioinformatics, Ghent University, Belgium.
B28	Finding the differences: whole genome sequencing and analysis of a mono-zygotic twin discordant for schizophrenia; Peter De Rijk, Joke Reumers, Anthony Liekens, Maarten Van Den Bossche, Diether Lambrechts, Jurgen Del-Favero; VIB DMG / University of Antwerp.
B29	Evaluating the use of clustering trees for protein subfamily identification; Eduardo de Paula Costa, Celine Vens, Hendrik Blockeel; Dept. of Computer Science, Katholieke Universiteit Leuven, Belgium; Leiden Institute of Advanced Computer Science, Universiteit Leiden, The Netherlands.
B30	Analyzing NF-kB signaling networks in UVB treated Cutaneous T-Cell Lymphoma cell-lines using Gene expression profiling and Ingenuity Pathway Analysis; Amit Kumar, Thomas Sauter , Silvia Racolta , Dagmar Kulms, Petr Nazarov, Laurent Vallar; Life Sciences Research Unit, University of Luxembourg.
B31	Diabetes and Parkinson?s - two old friends? Unraveling potential connections between diseases by text-mining techniques; Maria Biryukov, Serge Eifes, Janos Binder, Venkata P. Satagopam, Reinhard Schneider; onScale Solutions, Germany.
B32	DTSpine: DTProbLog for pathway inference from cause-effect experiments; Joris Renkens, Guy Van den Broeck, Siegfried Nijssen, Kathleen Marchal K.U.Leuven.
B33	Top-down, bottom-up and middle out perspectives to model mitochondrial dysfunction and ROS generation in relation to neurodegenerative diseases; Alexey Kolodkin, Hans V. Westerhoff, Antonio del Sol Mesa and Rudi Balling; Luxembourg Centre for Systems Biomedicine, Unuversity of Luxembourg, Luxembourg ; Molecular Cell Physiology, VU University Amsterdam, the Netherlands.
B34	The impact of copy number variation in mental retardation: exploratory analysis; Peter Konings, Joris R. Vermeesch, Yves Moreau; ESAT, KU Leuven, Belgium.
B35	Clinical Data Miner - an Electronic Data Capture software framework that improves interrater agreement; Arnaud Installé, Dirk Timmerman, Thierry Van den Bosch, Bart De Moor; ESAT - SCD, Katholieke Universiteit Leuven, Belgium.
B36	Generate pseudo expression scores from ChIP-seq data; Filip Pattyn, Frank Westermann, Frank Speleman, Jo Vandesompele; Center for Medical Genetics, Ghent University, Belgium.
B37	Introducing conformational variability into X-ray structures based on experimental NMR data; Wim Vranken, Alex Volkov, Tom Lenaerts, Nico van Nuland; Department of Structural Biology, VIB and Structural Biology Brussels, Vrije Universiteit Brussel, Brussel, Belgium.
B38	Transcriptor: a web-tool for mining whole-genome transcriptomes of prokaryotes; Tilman Todt, Roland J. Siezen, Sacha A.F.T. van Hijum; Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, Radboud University Medical Centre, Nijmegen, The Netherlands.
B39	Network analysis of differential expression for drug target prioritization; Griet Laenen, Lieven Thorrez, Yves Moreau; ESAT, K.U.Leuven, Belgium.
B40	Tree-based machine learning methods for Zebrafish Image Analysis; Olivier Stern, Nathalie Jeanray, Raphaël Marée, Jessica Aceto, Benoît Pruvot, Pierre Geurts, Marc Muller, Louis Wehenkel; GIGA-Systems Biology & Chemical Biology, GIGA-R and Dept. EE CS, University of Liege, Belgium.
B41	Inferring gene association network from gene expression data using quantitative association rules; María Martínez-Ballesteros, Isabel Nepomuceno-Chamorro, José C. Riquelme; Lenguajes y Sistemas Informáticos, Universidad de Sevilla, Spain.
B42	Inferring gene co-expression networks with Biclustering based on linear correlations among genes; Juan A. Nepomuceno, Isabel Nepomuceno-Chamorro, Alicia Troncoso, Jesus Aguilar-Ruiz; Lenguaje y Sistemas Informaticos, Universidad de Sevilla, España.
B43	Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior; Christof Francke, Tom Groot, Kormelink, Yanick Hagemeijer, Lex Overmars, Vincent Sluijter, Roy Moezelaar and Roland J. Siezen; TI Food and Nutrition, Wageningen; Kluyver Center for Genomics of Industrial Fermentation, Delft; Wageningen University RC; NBIC, Nijmegen; CMBI, RU Nijmegen MC, the Netherlands.
B44	Mutalyzer 2: improved sequence variant descriptions from next generation sequencing data and gene variant databases; J.F.J. Laros, M. Vermaat, G.R. Stouten, J.T. den Dunnen, P.E.M. Taschner; Center for Human and Clinical Genetics, Leiden University Medical Center, The Netherlands.

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